Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015807712.1_cds_XP_016494941.1_9307
CDS Infomation

[gene=LOC107814122] [db_xref=GeneID:107814122] [protein=protein HOTHEAD-like isoform X2] [protein_id=XP_016494941.1] [location=join(4169..4268,5133..5514,9003..9313,9402..9787,9951..10519,11025..11079)] [gbkey=CDS]
Sequence

ATGGCTGTGGTTGGTGGTGCAGCAGCTCCACCTCTGATTTTGAAGCTTCTTCTCTCTTTA
CTTCTATGTTTTAATTACTCTTCTCCCACACTCATTCAAGCAGGTAAATGGGAACCGTGG
GAAGATAGGTACCCATTCATAAGAGAAGCAAGTTCATTCTCATCATCATCATCATCATCA
AATAATGGTAATAATATTAAGACCTATGACTATATAATAGTTGGAGGAGGCACAGCTGGT
TGTCCTTTGGCTGCAACTTTATCACAGAAATTTAGTGTATTATTGCTGGAAAGAGGAGGA
GTTCCATTTGCAAATGCAAATGTGTCTTTCATGCAGAATTTCCATATTGCTTTGGCTGAC
ACTTCACCTTCTTCTGCTTCTCAATACTTCCTCTCTACTGATGGCGTCTTTAATTCTAGA
GCTCGAGTTTTAGGTGGTGGCACTTGTATTAATGCTGGTTTTTACACTCGCGCTGGCCCT
AGTTACATTAAGAAAGCAGGTTGGGATTCTAAATTGGTGAATGAATCATATCCTTGGATT
GAGAAACAAATTGTACATAAACCAAACTTGGCTCCTTGGCAAAGAGCAGTAAGAGACAGT
CTTCTTGAAATTGGTATCTCACCATTCAATGGATTCACTTATGATCACATCTATGGAACC
AAGGTTGGTGGAACCATATTCGACCGGTTTGGACGTCGTCATACTGCAGCTGAACTACTT
GCCTCAGCTAATCCAAAGAAGTTGGATGTTTTGGTGCATGCCACAGTTCAAAAGATTGAT
TTTGATACATCAGGAAAGAAGCCAAGGGCAGTGGGAGTCATTTTCAAAGACGAGAACGGG
AACCAACACAAGGCATTTCTTTCAAAGAGGAAGGGAAGTGAGATTATAGTGTCATCTGGT
GCAATTGGTAGCCCTCATATTTTGATGCTTAGTGGAATTGGACCAAAAGCCGAGTTGGAA
AAGTTGAATATTCCGGTGGTTCTTGACAATAAGTTCGTTGGTCAAGGCATGTCAGATAAC
CCCTTAAACACGATCTTCGTTCCCACAAATAGGCACGTTGAGCAGTCGCTGATTCAGACT
GTAGGAATTACTAAGGAGGGGGTCTATATTGAAGCTAGTAGTGGATTTGGACAGTCCGGA
GATAGCATTCGTTGCAACCATGGAGTCGCTTCAGCTGAGATAGGGCAACTGTCCACCATT
CCTCCAAAGCAGAGAACATTTGAAGCAATTGAAGCATACCGAAGAAGCAAGAAAAACATT
CCACACGAGTTGTTTAGGGGAGGTTTCATCTTAGAAAAAATAGCAACACCTTTGTCAAGA
GGGAACATTAGCCTTGTCACTACAAACGCCGATGACAACCCTTCAATCACCTTCAACTAC
TTCAGCCATCCACGTGATCTAAAGCGATGTGTAGATGGAATACGCATTGTGGAGAAGATC
GCGAAATCCAAACACTTCACCAACTACACACAGTGTGACAAAGAGACATTGGATAAGCTC
CTTAACATGAGTGTCCAAGCTAATGTTAATCTTATACCAAAACACACTAATAACACACAG
TCATTAGAACAGTTCTGCAAAGATACTGTGATCACGATATGGCATTACCATGGCGGGTGT
CATGTTGGCAAGGTGATCGCCCCGGACTACAGGGTTCTTGGTGTCCATAGGCTCCGAGTC
ATTGATGGTTCCACATTTGAAGAATCACCAGGCACAAATCCTCAAGCCACTGTTATGATG
ATGGGCAGGTACATGGGAGTGAAGATTCTAAGAGAGAGGTTAGGAAGAGCAGCTGGTTTG
TAA

Peptide Sequence

PEP ID

XP_016494941.1
PEP Infomation

PREDICTED: protein HOTHEAD-like isoform X2 [Nicotiana tabacum]
Sequence

MAVVGGAAAPPLILKLLLSLLLCFNYSSPTLIQAGKWEPWEDRYPFIREASSFSSSSSSS
NNGNNIKTYDYIIVGGGTAGCPLAATLSQKFSVLLLERGGVPFANANVSFMQNFHIALAD
TSPSSASQYFLSTDGVFNSRARVLGGGTCINAGFYTRAGPSYIKKAGWDSKLVNESYPWI
EKQIVHKPNLAPWQRAVRDSLLEIGISPFNGFTYDHIYGTKVGGTIFDRFGRRHTAAELL
ASANPKKLDVLVHATVQKIDFDTSGKKPRAVGVIFKDENGNQHKAFLSKRKGSEIIVSSG
AIGSPHILMLSGIGPKAELEKLNIPVVLDNKFVGQGMSDNPLNTIFVPTNRHVEQSLIQT
VGITKEGVYIEASSGFGQSGDSIRCNHGVASAEIGQLSTIPPKQRTFEAIEAYRRSKKNI
PHELFRGGFILEKIATPLSRGNISLVTTNADDNPSITFNYFSHPRDLKRCVDGIRIVEKI
AKSKHFTNYTQCDKETLDKLLNMSVQANVNLIPKHTNNTQSLEQFCKDTVITIWHYHGGC
HVGKVIAPDYRVLGVHRLRVIDGSTFEESPGTNPQATVMMMGRYMGVKILRERLGRAAGL

Transcript Sequence

Gene sequence data has not been registered.